Table 10: b- and k-systems reconstructions for gene KIF1B
fb1-fb3 are reconstructed functions for variable-based b-systems analyses, whose details are not included. fb4 and fb5 are reconstructed functions from b-systems models #4 and #5 in Table 11. fk3 and fk4 are for k-systems models #3 and #4 in Table 12


 

 

 

b-systems

k-systems


 

 

 

variable-based

state-based

state-based


O

G

f

fb1

fb2

fb3

fb4

fb5

fk3

fk4

0

0

2.34

2.40

2.36

2.37

2.39

2.36

2.39

2.39

0

1

2.41

2.40

2.41

2.40

2.39

2.40

2.39

2.39

0

2

2.41

2.40

2.40

2.40

2.39

2.40

2.39

2.39

1

0

2.21

2.22

2.20

2.19

2.22

2.22

2.25

2.25

1

1

2.28

2.22

2.24

2.25

2.22

2.22

2.25

2.25

1

2

2.25

2.22

2.19

2.19

2.22

2.22

2.25

2.25

2

0

1.84

2.04

2.03

2.04

2.04

2.04

1.84

1.87

2

1

1.90

2.04

2.04

2.04

2.04

2.04

1.84

1.87

2

2

1.76

2.04

2.03

2.00

2.04

2.04

1.84

1.76

 

 

rms-dev

0.124

0.121

0.117

0.125

0.124

0.041

0.029

 

 

R2

0.904

0.913

0.917

0.905

0.915

0.970

0.985

 

 

Δdf

4

8

16

3

4

2

3

reference for Δdf

OG:Z

uniform


models

b1=OG:OZ     b2=OG:OZ:GZ     b3=OGZ

k3=O

 

b4 = OG:Z:O0Z0:O2Z0:O1Z2

k 4 =O:O2:G2

 

b5 = OG:Z:O0Z0:O2Z0:O1Z2:O0G0Z1

 


Zwick et al.Journal of Molecular Engineering and Systems Biology  2012 1:4DOI : 10.7243/2050-1412-1-4