Table 3 : Genetic variation at 15 EST-SSR loci characterized in the clemson orchard.


Clemson orchard (163 trees)

Locus Sample Size Na Ne Obs_Hom Obs_Het Exp_Hom Exp_Het Nei’s I

LT002 326 6.00 3.16 0.28 0.72 0.31 0.69 0.68 1.35
LT015 324 8.00 2.30 0.46 0.54 0.43 0.57 0.57 1.11
LT021 324 6.00 1.99 0.54 0.46 0.50 0.50 0.50 1.01
LT086 318 9.00 1.84 0.69 0.31 0.54 0.46 0.46 1.00
LT096 308 18.00 3.75 0.38 0.62 0.26 0.74 0.73 1.80
LTCU19 326 15.00 3.20 0.40 0.60 0.31 0.69 0.69 1.71
LTCU51 324 18.00 7.74 0.26 0.74 0.13 0.87 0.87 2.26
LTCU53 310 13.00 4.84 0.30 0.70 0.20 0.80 0.79 1.89
LTCU125 308 26.00 11.46 0.05 0.95 0.08 0.92 0.91 2.75
LTCU143 306 14.00 4.84 0.23 0.77 0.20 0.80 0.79 1.81
LTUCU145 324 12.00 7.49 0.17 0.83 0.13 0.87 0.87 2.18
LTUCU150 322 14.00 2.90 0.42 0.58 0.34 0.66 0.66 1.61
LTUCU151 294 9.00 2.99 0.54 0.46 0.33 0.67 0.67 1.38
LTUCU152 258 25.00 15.89 0.33 0.67 0.06 0.94 0.94 2.91
LTUCU154 302 37.00 14.49 0.28 0.72 0.07 0.93 0.93 3.03
Mean 312 15.33 5.93 0.36 0.64 0.26 0.74 0.74 1.85
St. Dev. -- 8.53 4.59 0.16 0.16 0.15 0.15 0.15 0.66

Na: Observed number of alleles. Ne: Effective number of alleles (Kimura and Crow 1964). Obs_Hom/Obs_ Het: Observed
homozygosity/heterozygosity. Ext_Het/Exp_Het: expected homozygosity/heterozygosity (Levene 1949). Nei's (1973) expected
heterozygosity. I=Shannon's Information index (Lewontin 1972). St. Dev.: Standard deviation.

Liang et al.Journal of Plant Science and Molecular Breeding  2015 4:1DOI : 10.7243/2050-2389-4-1