Table 4 : Genes present in non-O1 Vibrio cholerae genome but absent in O1 V. cholerae.


Description Abbreviation
PS15
Accession
PS15

Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA oppA L1QVD3
Protein-export membrane protein SecF secF L1QTX8
UvrABC system protein A uvrA L1QY95
CopG protein* OSU_0951 L1R0A8
Cytochrome c heme lyase subunit CcmF* OSU_1000 L1QZI8
Cytochrome c heme lyase subunit CcmH* OSU_1003 L1R0Q0
Cytochrome c heme lyase subunit CcmL* OSU_1002 L1QZP2
Multi antimicrobial extrusion protein (Na(+)/drug antiporter) VcrM* OSU_3002 L1QUH8
Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM* OSU_0958 L1R0S0
Multidrug efflux pump component MtrF* OSU_0277 L1R1D8
Putative queD like protein* OSU_1874 L1QXS7
Type IIA topoisomerase, B subunit* OSU_0552 L1R212
Arsenical resistance operon repressor* OSU_0350 L1R2G7
Arsenical-resistance protein ACR3* OSU_0349 L1R1D6
Copper-sensing two-component system response regulator CusR* OSU_3536 L1QTJ3
DNA-binding heavy metal response regulator* OSU_2602 L1QVH5
Multidrug resistance transporter, Bcr/CflA family* OSU_2210 L1QWA2
MFS family multidrug transport protein, bicyclomycin resistance protein* OSU_0873 L1QZR8
Macrolide export ATP-binding/permease protein MacB* OSU_3185 L1QT51
P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance protein* OSU_1241 L1QZY1
Cobalt-zinc-cadmium resistance protein* OSU_1240 L1QZ70
Cobalt-zinc-cadmium resistance protein* OSU_2129 L1QWD3
Cobalt-zinc-cadmium resistance protein CzcD* OSU_1105 L1QYT4
Cytolysin and hemolysin, HlyA, Pore-forming toxin* OSU_0766 L1R001
Metalloprotease, containing putative zinc-binding domain* OSU_0770 L1R1C4
Translation initiation factor SUI1-related protein* OSU_0889 L1R0U9
Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB* OSU_0614 L1R0L1
ABC-type tungstate transport system, ATP-binding protein  OSU_0934 L1R0Z5
ABC-type tungstate transport system, periplasmic binding protein OSU_0932 L1R0H9
Phosphonate ABC transporter phosphate-binding periplasmic component  OSU_2433 L1QWK1
AttE component of AttEFGH ABC transport system OSU_0877 L1R138
AttF component of AttEFGH ABC transport system/AttG component of AttEFGH
ABC transport system
OSU_0878 L1QZS3
Peptide transport periplasmic protein sapA OSU_1956 L1QWN6
Magnesium and cobalt transport protein CorA OSU_0364 L1R1E9
Mg/Co/Ni transporter MgtE / CBS domain containing protein OSU_1331 L1QYJ2
MSHA biogenesis protein MshO OSU_1466 L1QY52
MSHA biogenesis protein MshP OSU_1467 L1QYW4
MSHA biogenesis protein MshQ OSU_1468 L1QYB3
Multimodular transpeptidase-transglycosylase OSU_1188 L1R077
Multimodular transpeptidase-transglycosylase OSU_0534 L1R0P0
Type IV fimbrial biogenesis protein FimT OSU_0787 L1QZX9
Type IV fimbrial biogenesis protein PilV OSU_0784 L1R0R8
Type IV fimbrial biogenesis protein PilW OSU_0786 L1R195
Type IV pilin PilA OSU_2009 L1QWH3
Type IV pilus biogenesis protein PilE OSU_0788 L1R035
Type IV pilus biogenesis protein PilM OSU_1187 L1QZ62
Type IV pilus biogenesis protein PilN OSU_1186 L1QZS4
Type IV pilus biogenesis protein PilO OSU_1185 L1QZ15
Type IV pilus biogenesis protein PilQ OSU_1183 L1R071
Conjugative signal peptidase TrhF OSU_2230 L1QWL7
Conjugative transfer protein s043 OSU_2245 L1QWN3
IncF plasmid conjugative transfer pilus assembly protein TraB OSU_2239 L1QVW4
IncF plasmid conjugative transfer pilus assembly protein TraC OSU_2232 L1QX28
IncF plasmid conjugative transfer pilus assembly protein TraE OSU_2241 L1QW42
IncF plasmid conjugative transfer pilus assembly protein TraF OSU_0332 L1R1B9
IncF plasmid conjugative transfer pilus assembly protein TraH OSU_0331 L1R173
IncF plasmid conjugative transfer pilus assembly protein TraK OSU_2240 L1QWM9
IncF plasmid conjugative transfer pilus assembly protein TraL OSU_2242 L1QX38
IncF plasmid conjugative transfer pilus assembly protein TraU OSU_2228 L1QVR6
IncF plasmid conjugative transfer pilus assembly protein TraW OSU_2229 L1QVV2
IncF plasmid conjugative transfer protein TraD OSU_2247 L1QX42
IncF plasmid conjugative transfer protein TraG OSU_0330 L1R2J2
IncF plasmid conjugative transfer protein TraN OSU_2227 L1QX23
Ync OSU_2235 L1QWM2
Ynd OSU_2236 L1QW36
Toxin co-regulated pilus biosynthesis protein E, anchors TcpT to membrane OSU_2156 L1QXB5
T1SS associated transglutaminase-like cysteine proteinase (LapP) OSU_2969 L1QUR2
Membrane-fusion protein OSU_2970 L1QU65
ABC-type bacteriocin/lantibiotic exporter, containing an N-terminal
double-glycine peptidase domain
OSU_2967 L1QTT3
Outer membrane protein ImpK/VasF, OmpA/MotB domain containing OSU_1572 L1QY45
Protein ImpG/VasA OSU_1567 L1QY39
Type VI secretion lipoprotein/VasD OSU_1570 L1QXY9
Type VI secretion protein VasI OSU_1575 L1QXZ3
Type VI secretion-related protein VasL OSU_1578 L1QZ51
Uncharacterized protein ImpB OSU_1564 L1QXT4
Uncharacterized protein ImpC OSU_1565 L1QXY4
Uncharacterized protein ImpH/VasB OSU_1568 L1QZ45
Uncharacterized protein ImpI/VasC OSU_1569 L1QXT8
Uncharacterized protein ImpJ/VasE OSU_1571 L1QYQ3
VgrG-3 protein OSU_1579 L1QXU5
TRAP transporter solute receptor, TAXI family OSU_1483 L1QYC6
TRAP transporter solute receptor, TAXI family OSU_1598 L1QZ65
TRAP-type uncharacterized transport system, fused permease component OSU_1482 L1QYX7
TRAP-type C4-dicarboxylate transport system, periplasmic component OSU_1751 L1QXA6
Na+/ H+ antiporter subunit E OSU_1606 L1QYT1
Na+/ H+ antiporter subunit F OSU_1605 L1QY16
Na+/ H+ antiporter subunit G OSU_1604 L1QXW5
Di-/tripeptide transporter OSU_0457 L1R0U7
Di/tripeptide permease DtpA OSU_2702 L1QVD6
4-hydroxybenzoyl-CoA thioesterase family active site protein OSU_1280 L1QZ99
MotA/TolQ/ExbB proton channel family protein OSU_3208 L1QUH0
TPR repeat containing exported protein OSU_1274 L1QYK6
TonB system biopolymer transport component/Chromosome segregation ATPase OSU_3207 L1QTE4
TonB-dependent heme and hemoglobin receptor HutA/TonB-dependent hemin,
ferrichrome receptor
OSU_0883 L1QZU0
PTS system, N-acetylglucosamine-specific IIA, IIB, IIC component OSU_2709 L1QVU6
Ferrichrome-iron receptor OSU_1805 L1QX54
Enterobactin receptor VctA OSU_0353 L1R1Z3
Putative divalent cation transport protein OSU_1717 L1QXK6
Tricarboxylate transport protein TctC OSU_2307 L1QVT4
Membrane fusion component of tripartite multidrug resistance system OSU_0595 L1R1A1
AmpG permease OSU_2915 L1QVA5
High-affinity choline uptake protein BetT OSU_2908 L1QUU0
Uncharacterized protein OSU_3399 L1QSI2
Tricarboxylate transport membrane protein TctA EMBL EKY32019 OSU_2305 L1QVL0
Uncharacterized protein OSU_2298 L1QWR3
Ca2+/H+ antiporter OSU_1800 L1QX51
Putative permease OSU_2291 L1QWA8
Transporter, LysE family OSU_0512 L1R248
Error-prone repair protein UmuD§ OSU_2250 L1QWN9
Error-prone, lesion bypass DNA polymerase V (UmuC)§ OSU_3541 L1QX48
Error-prone, lesion bypass DNA polymerase V (UmuC)§ OSU_2251 L1QW51
Type I restriction-modification system, DNA-methyltransferase subunit M§ OSU_2542 L1QV27
Type I restriction-modification system, specificity subunit S§ OSU_2543 L1QVX0

Included in this table are genes coding for virulence, disease and defense, membrane transport and DNA metabolism.
The first column includes gene descriptions as per UniProt. Second and third columns represent abbreviated identifications
and accession numbers for the described genes, respectively, and (*) includes proteins that have putative functions in the
virulence, disease or defense categories; symbols () and (§) represent proteins with functions in membrane transport and
DNA metabolism categories, respectively.

Varela et al.Genomics Discovery  2014 2:1DOI : 10.7243/2052-7993-2-1