Table 1: Name of candidate genes along with their primer sequence and amplicon size and SSR marker information for Pop-DG
S No. |
Primer |
Forward (5’-3’) |
Reverse (5’-3’) |
Temp (°C) |
Amplicon |
Polymorphism type |
1 |
CG1 |
GCTGATTACATGTAAGTACTCAAGG |
GTAGCCTCACTGCAAAGGTAT |
57 |
291 |
SSR |
2 |
CG2 |
AACCTCTCCAGAATACCACTC |
TATTTCAAGAGCTGAGTTTGG |
57 |
218 |
SSR |
3 |
CG5 |
TAGAGACAGCAAACAGAGGAA |
AAACCCATCTTCTGCTTCTAC |
57 |
129 |
SSR |
4 |
CG6 |
TTCTGGTACCGAACGAAA |
AGCACTAATCAGCTCCTAA |
57 |
138 |
SSR |
5 |
CG7 |
GGCGCTTCCTCCTTATACAAC |
GATCTGGCCGAGACTGAATG |
57 |
201 |
SSR |
6 |
CG12 |
ATGAAGAGTTTGTGGCAAGG |
CCACTTCATTCACAATCACG |
57 |
211 |
SSR |
7 |
CG14 |
GAGGTGTTGGAACCATCAAG |
GGTAGTTGCTGGTGCTCTTT |
57 |
219 |
SSR |
8 |
CG16 |
CGGTCAATCTTCCGATATTC |
TTCCTCGCTCATATTGGACT |
57 |
205 |
SSR |
9 |
CG18 |
AGTCCCTGGATTCCTCAAA |
ACACACGAGTGACCAGCA |
57 |
257 |
SSR |
10 |
CG19 |
CGTGAAGAAGCCTCACAGA |
TCCTCAAACAACCCAACAA |
57 |
216 |
SSR |
11 |
CG30 |
ATTGCAACGGAAACCAACT |
AATGCGTGGATCGTTCTTT |
57 |
248 |
SSR |
12 |
CG31 |
AAGGGTCATGTGACCTGCT |
AGTCGAAGCCATTAATGCAG |
57 |
248 |
SSR |
13 |
CG36 |
CTAAGAGACCCGAGGTTGAAG |
AGCTTCATGTCTGTCAAGTGG |
57 |
242 |
SSR |
14 |
CG37 |
GACAGCAAAAACGAAGGTTG |
TACGGCTCTTGTTCTTGTCC |
57 |
288 |
SSR |
15 |
CG38 |
AGTTCTTCAGATGCCAACCAT |
TTGTCCCTGTCTTCATCCAT |
57 |
299 |
SSR |
16 |
CG40 |
GAAGCCTGCCATTGATTCTA |
ATCTCGCGTAATGTCTCCAC |
57 |
248 |
SSR |
|
SSRs |
Forward (5’-3’) |
Reverse (5’-3’) |
Temp (°C) |
Amplicon |
Polymorphism type |
1 |
BPPCT-021 |
TGCATGAGAAACTTGTGGC |
CCAAGAGCCTGACAAAGC |
57 |
288 |
SSR |
2 |
BPPCT-020 |
CGTGGATGGTCAAGATGC |
ATTGACGTGGACTTACAGGTG |
57 |
216 |
SSR |
3 |
BPPCT-021B |
TGCATGAGAAACTTGTGGC |
CCAAGAGCCTGACAAAGC |
57 |
248 |
SSR |
4 |
UCDCH15 |
TGCATGAGAAACTTGTGGC |
CCAAGAGCCTGACAAAGC |
57 |
248 |
SSR |
5 |
BPPCT-036 |
AAGCAAAGTCCATAAAAACGC |
GGACGAAGACGCTCCATT |
57 |
248 |
SSR |
6 |
BPPCT-015 |
ATGGAAGGGAAGAGAAATCG |
GTCATCTCAGTCAACTTTTCCG |
57 |
129 |
SSR |
7 |
BPPCT-026 |
ATACCTTTGCCACTTGCG |
TGAGTTGGAAGAAAACGTAACA |
57 |
138 |
SSR |
8 |
BPPCT-017 |
TTAAGAGTTTGTGATGGGAACC |
AAGCATAATTTAGCATAACCAAGC |
57 |
218 |
SSR |