Table 2: Features of candidate genes with their functional annotation of Pop-DG.

The list shows name of 50 CGs with their Unigene Functional annotation and their position in scaffolds of peach genome. 40 CGs were from transcriptomic analysis of Pop-DG. 10 CGs (41-50) were from other published sources.


S.No.

Name of  CGs  in mapping and scaffolds

Name of Candidate Genes from transcriptomic analysis

Source

Similar Prunus persica  DNA sequence ID

Unigene Functional Annotation

 

Position in  scaffolds of peach genome


1

CG1

 PPLDOX

Chill Peach

ABX89943

Leucoanthocyanidin dioxygenase gene

scaffold_5:9,817,818..9,819,338

2

CG2

 PPN011D08

Chill Peach

BU044303

Phi-1 protein

scaffold_1:18,494,503..18,502,877

3

CG3

 PPN059B10

Chill Peach

 NA

Os01g0186900 protein

scaffold_7:19,378,715..19,379,406

4

CG4

 PPN038D06

Chill Peach

DW341257

Glycosyltransferase QUASIMODO1

scaffold_8:18,126,089..18,127,289

5

CG5

 PP1004C04 

Chill Peach

DN676686

Mannan endo-1,4-beta-mannosidase

scaffold_1:21,828,585..21,829,753

6

CG6

 PPN040G09

Chill Peach

 NA

Cell cycle checkpoint protein RAD17

scaffold_7:17,694,654..17,695,645

7

CG7

 PP1002E07

Chill Peach

AJ824111

Omega-6 fatty acid desaturase

scaffold_7:10,931,319..10,934,687

8

CG8

 PP1001G06

Chill Peach

P43297

Cysteine protease CP1

scaffold_1:22,788,451..22,790,193

9

CG9

 PP1001A05

Chill Peach

P51846

Pyruvate decarboxylase 1

scaffold_6:24,372,690..24,377,696

10

CG10

 PP1001C07

Chill Peach

DY649642

Mitochondrial pyruvate dehydrogenase kinase isoform 2

scaffold_1:8,042,187..8,043,567

11

CG11

 PP1003F01

Chill Peach

DY641887

4-coumarate-CoA ligase-like protein

scaffold_5:10,637,165..10,637

12

CG12

 PPN004H06

Chill Peach

AB044662.1

1-aminocyclopropane-1-carboxylate synthase 1

scaffold_2:18,502,578..18,502,877

13

CG13

 PP1001C04

Chill Peach

DY643195

Ring zinc finger protein

scaffold_6:5,374,851..5,376,021

14

CG14

 PPN045B08

Chill Peach

BU043492

Major cherry allergen Pru av 1.0203

scaffold_1:9,560,967..9,566,560

15

CG15

 PP1004E08

Chill Peach

DY650607

AT3g15350/K7L4_15

scaffold_4:10,707,438..10,709,198

16

CG16

 PPN009B03

Chill Peach

 NA

Chlorohydrolase family protein

scaffold_1:22,614,349..22,615,237

17

CG17

 PPN025B02

Chill Peach

BU040021

similar to Cyclic nucleotide-gated ion channel 1

scaffold_8:12,221,208..12,222,294

18

CG18

 PPN070C12

Chill Peach

DW346523

PP_LEc0008N19f Peach shoot Prunus persica

scaffold_3:9,394,101..9,394,881

19

CG19

 PPN032H11

Chill Peach

BU041375

Histone protein Hist2h3c1

scaffold_1:22,024,422..22,025,550

20

CG20

 PP1002D01

Chill Peach

AJ822461

Putative ripening-related protein

scaffold_6:23,110,781..23,111,935

21

CG21

 PPN012B10

Chill Peach

DY644352

Putative ripening-related protein

scaffold_6:23,110,786..23,112,557

22

CG22

 PP1001B03

Chill Peach

DY639769

Os04g0623400 protein

scaffold_6:26288000..26289999

23

CG23

 PP1005B08

Chill Peach

 NA

Unknown

scaffold_4:17436741..17438740

24

CG24

 PPN075H08

Chill Peach

DY642462

Os01g0818000 protein

scaffold_6:25353012..25355011

25

CG25

 PPN032A07

Chill Peach

DW347694

T23O15.3/T23O15.3

scaffold_3:15336089..15338088

26

CG26

 PPN078F09

Chill Peach

DY638908

Protease-associated PA

scaffold_1:22011177..22025550

27

CG27

 PPN054B03

Chill Peach

DY639769

CBF1

scaffold_2:24800744..24802743

28

CG28

 PPN054B07

Chill Peach

DY640636

Calcium-binding EF-hand

scaffold_4:11650422..11652421

29

CG29

 PPN003H11

Chill Peach

DY641715

Cinnamoyl-CoA reductase-like protein

scaffold_1:7494927..7496926

30

CG30

 PP1002E04

Chill Peach

AF362990.1

Alpha-L-arabinofuranosidase / beta-D-xylosidase

scaffold_1:9204523..9206522

31

CG31

 PP1005H08

Chill Peach

 NA

No annotation available

scaffold_7:15559769..15564768

32

CG32

 PPN005G05

Chill Peach

DY653721

Anther ethylene-upregulated protein ER

scaffold_1:8242276..8244275

33

CG33

 PPN039H11

Chill Peach

DY637895

Glutathione S-transferase

scaffold_3:95408..97407

34

CG34

 PPN070G08

Chill Peach

DY634402

Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)

scaffold_7:19628203..19630202

35

CG35

 PP1009D05

Chill Peach

DY645444

Amino acid transporter

scaffold_1:30527322..30529321

36

CG36

 PPN023G06

Chill Peach

DY646993

Mi-2 autoantigen-like protein

scaffold_4:6182101..6184100

37

CG37

 PPN029B05

Chill Peach

 NA

No annotation available

scaffold_1:30527234..30529233

38

CG38

 PPN021B10

Chill Peach

DY648396

similar to Location of EST 206I21T7

scaffold_5:12724586..12726585

39

CG39

 PPN021G05

Chill Peach

 NA

Armadillo

scaffold_4:1774113..1776112

40

CG40

 PPN037E06

Chill Peach

AJ827029

RSI-1 protein precursor

scaffold_3:12708896..12710895


S.No.

Name of  CGs  in mapping and scaffolds

Name of Candidate Genes from other sources

Source

Similar Prunus persica  DNA sequence ID

Unigene Functional Annotation

 

Position in  scaffolds of peach genome


41

CG41

PPN003H07-1

Chill Peach

AF362987

Thaumatin-like 1 protein

scaffold_7:8543779..8545778

42

CG42

PPN003H07-2

Chill Peach

AF362988

Thaumatin-like 2 protein

scaffold_3:9873109..9875108

43

CG43

CL1439Contig1

Chill Peach

DQ251187

major allergen Pru p 1

scaffold_1:9586936..9597544

44

CG44

PP1001B08

Chill Peach

AF367443

NADP-dependent isocitrate dehydrogenase

scaffold_3:242975..247974

45

CG45

CL417Contig1

Chill Peach

BU043362

Pectate lyase

scaffold_6:22023991..22025990

46

CG46

PPN002G04

Chill Peach

X95991

Pectinesterase

scaffold_7:18644917..18650259

47

CG47

PP1006B11-1

Chill Peach

AF367459

PpExp1, expansin 1

scaffold_1:22788899..22790898

48

CG48

PP1006B11-2    

Chill Peach

AB047518

PpExp2, expansin 2

scaffold_1:27209405..27211404

49

CG49

CL971Contig1 

Chill Peach

AB047519

PpExp3, expansin 3

scaffold_6:5141253..5143970

50

CG50

PP1006B11-3

Chill Peach

AB054319

PpExp4, expansin  4

scaffold_3:19591237..19593236


NA - not available

Dhanapal et al.Journal of Plant Science and Molecular Breeding  2012 1:3DOI : 10.7243/2050-2389-1-3