Table 2: Features of candidate genes with their functional annotation of Pop-DG.
The list shows name of 50 CGs with their Unigene Functional annotation and their position in scaffolds of peach genome. 40 CGs were from transcriptomic analysis of Pop-DG. 10 CGs (41-50) were from other published sources.
S.No. |
Name of CGs in mapping and scaffolds |
Name of Candidate Genes from transcriptomic analysis |
Source |
Similar Prunus persica DNA sequence ID |
Unigene Functional Annotation |
Position in scaffolds of peach genome |
1 |
CG1 |
PPLDOX |
Chill Peach |
ABX89943 |
Leucoanthocyanidin dioxygenase gene |
scaffold_5:9,817,818..9,819,338 |
2 |
CG2 |
PPN011D08 |
Chill Peach |
BU044303 |
Phi-1 protein |
scaffold_1:18,494,503..18,502,877 |
3 |
CG3 |
PPN059B10 |
Chill Peach |
NA |
Os01g0186900 protein |
scaffold_7:19,378,715..19,379,406 |
4 |
CG4 |
PPN038D06 |
Chill Peach |
DW341257 |
Glycosyltransferase QUASIMODO1 |
scaffold_8:18,126,089..18,127,289 |
5 |
CG5 |
PP1004C04 |
Chill Peach |
DN676686 |
Mannan endo-1,4-beta-mannosidase |
scaffold_1:21,828,585..21,829,753 |
6 |
CG6 |
PPN040G09 |
Chill Peach |
NA |
Cell cycle checkpoint protein RAD17 |
scaffold_7:17,694,654..17,695,645 |
7 |
CG7 |
PP1002E07 |
Chill Peach |
AJ824111 |
Omega-6 fatty acid desaturase |
scaffold_7:10,931,319..10,934,687 |
8 |
CG8 |
PP1001G06 |
Chill Peach |
P43297 |
Cysteine protease CP1 |
scaffold_1:22,788,451..22,790,193 |
9 |
CG9 |
PP1001A05 |
Chill Peach |
P51846 |
Pyruvate decarboxylase 1 |
scaffold_6:24,372,690..24,377,696 |
10 |
CG10 |
PP1001C07 |
Chill Peach |
DY649642 |
Mitochondrial pyruvate dehydrogenase kinase isoform 2 |
scaffold_1:8,042,187..8,043,567 |
11 |
CG11 |
PP1003F01 |
Chill Peach |
DY641887 |
4-coumarate-CoA ligase-like protein |
scaffold_5:10,637,165..10,637 |
12 |
CG12 |
PPN004H06 |
Chill Peach |
AB044662.1 |
1-aminocyclopropane-1-carboxylate synthase 1 |
scaffold_2:18,502,578..18,502,877 |
13 |
CG13 |
PP1001C04 |
Chill Peach |
DY643195 |
Ring zinc finger protein |
scaffold_6:5,374,851..5,376,021 |
14 |
CG14 |
PPN045B08 |
Chill Peach |
BU043492 |
Major cherry allergen Pru av 1.0203 |
scaffold_1:9,560,967..9,566,560 |
15 |
CG15 |
PP1004E08 |
Chill Peach |
DY650607 |
AT3g15350/K7L4_15 |
scaffold_4:10,707,438..10,709,198 |
16 |
CG16 |
PPN009B03 |
Chill Peach |
NA |
Chlorohydrolase family protein |
scaffold_1:22,614,349..22,615,237 |
17 |
CG17 |
PPN025B02 |
Chill Peach |
BU040021 |
similar to Cyclic nucleotide-gated ion channel 1 |
scaffold_8:12,221,208..12,222,294 |
18 |
CG18 |
PPN070C12 |
Chill Peach |
DW346523 |
PP_LEc0008N19f Peach shoot Prunus persica |
scaffold_3:9,394,101..9,394,881 |
19 |
CG19 |
PPN032H11 |
Chill Peach |
BU041375 |
Histone protein Hist2h3c1 |
scaffold_1:22,024,422..22,025,550 |
20 |
CG20 |
PP1002D01 |
Chill Peach |
AJ822461 |
Putative ripening-related protein |
scaffold_6:23,110,781..23,111,935 |
21 |
CG21 |
PPN012B10 |
Chill Peach |
DY644352 |
Putative ripening-related protein |
scaffold_6:23,110,786..23,112,557 |
22 |
CG22 |
PP1001B03 |
Chill Peach |
DY639769 |
Os04g0623400 protein |
scaffold_6:26288000..26289999 |
23 |
CG23 |
PP1005B08 |
Chill Peach |
NA |
Unknown |
scaffold_4:17436741..17438740 |
24 |
CG24 |
PPN075H08 |
Chill Peach |
DY642462 |
Os01g0818000 protein |
scaffold_6:25353012..25355011 |
25 |
CG25 |
PPN032A07 |
Chill Peach |
DW347694 |
T23O15.3/T23O15.3 |
scaffold_3:15336089..15338088 |
26 |
CG26 |
PPN078F09 |
Chill Peach |
DY638908 |
Protease-associated PA |
scaffold_1:22011177..22025550 |
27 |
CG27 |
PPN054B03 |
Chill Peach |
DY639769 |
CBF1 |
scaffold_2:24800744..24802743 |
28 |
CG28 |
PPN054B07 |
Chill Peach |
DY640636 |
Calcium-binding EF-hand |
scaffold_4:11650422..11652421 |
29 |
CG29 |
PPN003H11 |
Chill Peach |
DY641715 |
Cinnamoyl-CoA reductase-like protein |
scaffold_1:7494927..7496926 |
30 |
CG30 |
PP1002E04 |
Chill Peach |
AF362990.1 |
Alpha-L-arabinofuranosidase / beta-D-xylosidase |
scaffold_1:9204523..9206522 |
31 |
CG31 |
PP1005H08 |
Chill Peach |
NA |
No annotation available |
scaffold_7:15559769..15564768 |
32 |
CG32 |
PPN005G05 |
Chill Peach |
DY653721 |
Anther ethylene-upregulated protein ER |
scaffold_1:8242276..8244275 |
33 |
CG33 |
PPN039H11 |
Chill Peach |
DY637895 |
Glutathione S-transferase |
scaffold_3:95408..97407 |
34 |
CG34 |
PPN070G08 |
Chill Peach |
DY634402 |
Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) |
scaffold_7:19628203..19630202 |
35 |
CG35 |
PP1009D05 |
Chill Peach |
DY645444 |
Amino acid transporter |
scaffold_1:30527322..30529321 |
36 |
CG36 |
PPN023G06 |
Chill Peach |
DY646993 |
Mi-2 autoantigen-like protein |
scaffold_4:6182101..6184100 |
37 |
CG37 |
PPN029B05 |
Chill Peach |
NA |
No annotation available |
scaffold_1:30527234..30529233 |
38 |
CG38 |
PPN021B10 |
Chill Peach |
DY648396 |
similar to Location of EST 206I21T7 |
scaffold_5:12724586..12726585 |
39 |
CG39 |
PPN021G05 |
Chill Peach |
NA |
Armadillo |
scaffold_4:1774113..1776112 |
40 |
CG40 |
PPN037E06 |
Chill Peach |
AJ827029 |
RSI-1 protein precursor |
scaffold_3:12708896..12710895 |
S.No. |
Name of CGs in mapping and scaffolds |
Name of Candidate Genes from other sources |
Source |
Similar Prunus persica DNA sequence ID |
Unigene Functional Annotation |
Position in scaffolds of peach genome |
41 |
CG41 |
PPN003H07-1 |
Chill Peach |
AF362987 |
Thaumatin-like 1 protein |
scaffold_7:8543779..8545778 |
42 |
CG42 |
PPN003H07-2 |
Chill Peach |
AF362988 |
Thaumatin-like 2 protein |
scaffold_3:9873109..9875108 |
43 |
CG43 |
CL1439Contig1 |
Chill Peach |
DQ251187 |
major allergen Pru p 1 |
scaffold_1:9586936..9597544 |
44 |
CG44 |
PP1001B08 |
Chill Peach |
AF367443 |
NADP-dependent isocitrate dehydrogenase |
scaffold_3:242975..247974 |
45 |
CG45 |
CL417Contig1 |
Chill Peach |
BU043362 |
Pectate lyase |
scaffold_6:22023991..22025990 |
46 |
CG46 |
PPN002G04 |
Chill Peach |
X95991 |
Pectinesterase |
scaffold_7:18644917..18650259 |
47 |
CG47 |
PP1006B11-1 |
Chill Peach |
AF367459 |
PpExp1, expansin 1 |
scaffold_1:22788899..22790898 |
48 |
CG48 |
PP1006B11-2 |
Chill Peach |
AB047518 |
PpExp2, expansin 2 |
scaffold_1:27209405..27211404 |
49 |
CG49 |
CL971Contig1 |
Chill Peach |
AB047519 |
PpExp3, expansin 3 |
scaffold_6:5141253..5143970 |
50 |
CG50 |
PP1006B11-3 |
Chill Peach |
AB054319 |
PpExp4, expansin 4 |
scaffold_3:19591237..19593236 |
NA - not available