Table 2 : Affymetrix Wheat1 GeneChip probe sets showing down-regulated transcript levels in the fast-neutron mutants Yr5del55 and Yr5del67 compared to Lemhi*8/Yr5.

Probe Set ID Yr5del55 v Lemhi*8/Yr5 Yr5del67 v Lemhi*8/Yr5 Annotation from HarvEST/Plexdb
p-value FC p-value FC
Ta.1944.1.S1_at 9.67E-05 -49.4881 4.79E-04 -46.19151 Superoxide dismutase [Mn] 3.1, mitochondrial precursor
Ta.27140.1.S1_at 0.001556 -5.7364397 3.65E-04 -6.0843663 Putative MATE efflux protein family protein
Ta.178.2.S1_at 0.0108303 -8.481019 0.0164578 -7.719493 Cystatin WC-1
Ta.178.2.S1_x_at 0.0063519 -3.0741243 3.94E-04 -3.1455898 Cystatin WC-1
Ta.1688.1.S1_at 0.0172641 -2.4441025 0.0143996 -2.8630302 UDP-glucosyltransferase BX8
Ta.14545.1.S1_at 0.0188015 -6.2296305 0.0337206 -4.38153 Putative O-methyltransferase
Ta.1112.1.S1_at 0.0104491 -13.676553 0.0097063 -11.446178 none
TaAffx.14477.1.S1_at 2.92E-04 -3.4393673 7.88E-04 -3.140847 none
Ta.611.1.A1_at 3.35E-04 -75.71564 8.97E-05 -73.59188 Hypothetical protein
Ta.21290.1.A1_s_at 0.0194118 -3.8935266 0.0315453 -3.4232893 none
Ta.8757.2.S1_at 0.0363228 -2.5777307 0.0382263 -2.3648314 Phosphoserine phosphatase
Ta.21005.1.S1_at 0.0143132 -3.9735072 0.0168927 -3.7059195 none
Ta.14729.1.S1_at 0.0321907 -2.1196191 0.0433241 -2.1017556 none
Ta.30504.1.A1_at 0.0069815 -3.1662958 0.0080916 -2.542934 Nonspecific lipid transfer protein
TaAffx.73741.1.S1_at 0.0066044 -2.3675597 0.0203833 -2.5882344 none
Ta.17028.1.A1_s_at 0.0485578 -2.5108774 0.0117914 -2.0112689 Putative HGA1
Ta.7149.1.A1_s_at 0.0011034 -3.3122602 0.0024801 -2.7918813 none
TaAffx.616.2.S1_s_at 0.0392292 -2.034222 0.0124056 -2.1673586 Hypothetical protein
TaAffx.66205.2.S1_s_at 0.0011056 -3.7338786 7.50E-04 -4.0016356 Intracellular protease, PfpI family protein
TaAffx.100436.1.S1_at 0.0086405 -11.848047 0.0050554 -13.363708 none
Ta.16298.1.S1_at 0.0120654 -2.2416117 0.0070407 -4.001226 none
Ta.16582.1.S1_at 0.0380914 -4.0853386 0.0334678 -4.1695147 none
Ta.8552.1.A1_at 0.0082964 -8.785303 0.0076009 -10.224292 none
Ta.16476.1.S1_at 0.016985 -2.2019472 0.041713 -2.0130389 none
TaAffx.43914.1.S1_s_at 0.0482835 -2.589973 0.0170548 -2.3887548 Expressed protein
Ta.17295.1.S1_at 0.0014027 -6.2927947 6.71E-04 -6.619841 none
Ta.9039.2.S1_x_at 3.03E-05 -4.570216 1.28E-04 -4.4122486 Intracellular protease, PfpI family protein
TaAffx.53602.1.S1_at 0.0419488 -4.863748 0.0042042 -2.164832 NAD(P)H-quinone oxidoreductase chain 4, chloroplast
TaAffx.57738.1.S1_at 6.15E-04 -2.2537112 3.81E-04 -2.5442169 aspartic proteinase nepenthesin-1 precursor
TaAffx.51578.1.S1_at 0.0383779 -2.1451643 0.0222281 -2.5058053 none
TaAffx.7104.1.S1_at 0.0041442 -3.927811 0.0064122 -3.9704103 Putative DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
TaAffx.7104.1.S1_x_at 0.0319099 -2.7847736 0.0351291 -2.5745335 Putative DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
TaAffx.74512.2.S1_s_at 0.0128684 -2.3639889 0.0182374 -2.343101 flavonol 4-sulfotransferase
Ta.611.2.S1_at 2.18E-04 -17.154543 9.36E-05 -15.461136 none
TaAffx.21788.1.S1_at 1.99E-04 -5.1074266 4.92E-04 -4.860779 none
Ta.19222.1.S1_at 7.20E-04 -10.351834 0.0032261 -11.462584 none
Ta.19222.1.S1_x_at 0.0026437 -3.3132606 0.0040692 -3.4967139 none
Ta.20262.2.S1_at 0.0120548 -6.4605107 0.0153281 -5.864731 none
Ta.23203.3.S1_at 9.05E-06 -9.235376 3.23E-04 -9.367666 none
TaAffx.22603.1.S1_at 0.0068985 -2.319124 0.0109216 -2.5344298 none

Boyd et al.Journal of Plant Science and Molecular Breeding  2014 3:2DOI : 10.7243/2050-2389-3-2